DDB1 Antibody [M17E15]

製品コード:F5000

印刷

生物学的記述

Specificity DDB1 Antibody [M17E15] detects endogenous levels of total DDB1 protein.
Background DDB1 (damage-specific DNA binding protein 1), the scaffold subunit of the CRL4 ubiquitin E3 ligase family, orchestrates nucleotide excision repair initiation, histone eviction, and cell cycle checkpoint enforcement by recruiting diverse substrate receptors to damaged chromatin sites. Its propeller blade architecture with a central β-sheet core accommodates the DDB2 WD40 domain for lesion-specific recognition of cyclobutane pyrimidine dimers and 6-4 photoproducts, while the lateral surface docks CUL4A-ROC1 to catalyze K48/K63-linked polyubiquitination of repair factors like XPC, DDB2 itself, and histones H3/H4. Upon UV exposure, DDB1 translocates from soluble to tightly chromatin-bound fractions in a DDB2-dependent manner, facilitating ubiquitination-mediated displacement of core histones to expose lesions for XPC loading and TFIIH recruitment; this histone code handover licenses dual incision while preventing error-prone repair. DDB1 scaffolds additional DCAFs like VprBP for HIV integration and CDT1 for replication licensing, integrating DNA damage with G1/S transition via p21/p27 degradation. DDB1 maintains genomic stability across proliferating tissues, with acute depletion triggering p53-dependent apoptosis in neural progenitors and hematopoietic stem cells through unresolved replication stress. Mutations underlie xeroderma pigmentosum E through defective UV-DDB assembly, while CUL4-DDB1 overexpression drives tumorigenesis via CDT1 hyperdegradation and replication origin firing.

使用情報

Application WB Dilution
WB
1:1000
Reactivity Human, Mouse, Rat, Monkey
Source Rabbit Monoclonal Antibody MW 127 kDa
Storage Buffer PBS, pH 7.2+50% Glycerol+0.05% BSA+0.01% NaN3
Storage
(from the date of receipt)
-20°C (avoid freeze-thaw cycles), 2 years
WB
Experimental Protocol:
 
Sample preparation
1. Tissue: Lyse the tissue sample by adding an appropriate volume of ice-cold RIPA/NP-40 Lysis Buffer (containing Protease Inhibitor Cocktail),and homogenize the tissue at a low temperature.
2. Adherent cell: Aspirate the culture medium and wash the cells with ice-cold PBS twice. Lyse the cells by adding an appropriate volume of RIPA/NP-40 Lysis Buffer (containing Protease Inhibitor Cocktail) and put the sample on ice for 5 min.
3. Suspension cell: Transfer the culture medium to a pre-cooled centrifuge tube. Centrifuge and aspirate the supernatant. Wash the cells with ice-cold PBS twice. Lyse the cells by adding an appropriate volume of RIPA/NP-40 Lysis Buffer (containing Protease Inhibitor Cocktail) and put the sample on ice for 5 min.
4. Place the lysate into a pre-cooled microcentrifuge tube. Centrifuge at 4°C for 15 min. Collect the supernatant;
5. Remove a small volume of lysate to determine the protein concentration;
6. Combine the lysate with protein loading buffer. Boil 20 µL sample under 95-100°C for 5 min. Centrifuge for 5 min after cool down on ice.
 
Electrophoretic separation
1. According to the concentration of extracted protein, load appropriate amount of protein sample and marker onto SDS-PAGE gels for electrophoresis. Recommended separating gel (lower gel) concentration: 5%. Reference Table for Selecting SDS-PAGE Separation Gel Concentrations
2. Power up 80V for 30 minutes. Then the power supply is adjusted (110 V~150 V), the Marker is observed, and the electrophoresis can be stopped when the indicator band of the predyed protein Marker where the protein is located is properly separated. (Note that the current should not be too large when electrophoresis, too large current (more than 150 mA) will cause the temperature to rise, affecting the result of running glue. If high currents cannot be avoided, an ice bath can be used to cool the bath.)
 
Transfer membrane
1. Take out the converter, soak the clip and consumables in the pre-cooled converter;
2. Activate PVDF membrane with methanol for 1 min and rinse with transfer buffer;
3. Install it in the order of "black edge of clip - sponge - filter paper - filter paper - glue -PVDF membrane - filter paper - filter paper - sponge - white edge of clip";
4. The protein was electrotransferred to PVDF membrane. ( 0.45 µm PVDF membrane is recommended ) Reference Table for Selecting PVDF Membrane Pore Size Specifications
Recommended conditions for wet transfer: 200 mA, 120 min.
( Note that the transfer conditions can be adjusted according to the protein size. For high-molecular-weight proteins, a higher current and longer transfer time are recommended. However, ensure that the transfer tank remains at a low temperature to prevent gel melting.)
 
Block
1. After electrotransfer, wash the film with TBST at room temperature for 5 minutes;
2. Incubate the film in the blocking solution for 1 hour at room temperature;
3. Wash the film with TBST for 3 times, 5 minutes each time.
 
Antibody incubation
1. Use 5% skim milk powder to prepare the primary antibody working liquid (recommended dilution ratio for primary antibody 1:1000), gently shake and incubate with the film at 4°C overnight;
2. Wash the film with TBST 3 times, 5 minutes each time;
3. Add the secondary antibody to the blocking solution and incubate with the film gently at room temperature for 1 hour;
4. After incubation, wash the film with TBST 3 times for 5 minutes each time.
 
Antibody staining
1. Add the prepared ECL luminescent substrate (or select other color developing substrate according to the second antibody) and mix evenly;
2. Incubate with the film for 1 minute, remove excess substrate (keep the film moist), wrap with plastic film, and expose in the imaging system.

References

  • https://pubmed.ncbi.nlm.nih.gov/16951172/
  • https://pubmed.ncbi.nlm.nih.gov/19481525/

Application Data

WB

Validated by Selleck

  • F5000-wb.gif
    Lane 1: Hela, Lane 2: 3T3, Lane 3: PC-12, Lane 4: COS-7