SMARCD3/BAF60C Antibody [C13A4]

製品コード:F7401

印刷

生物学的記述

Specificity SMARCD3/BAF60C Antibody [C13A4] detects endogenous levels of total SMARCD3/BAF60C protein.
Background SMARCD3, also known as BAF60c, is a core subunit of the mammalian SWI/SNF (BAF) ATP-dependent chromatin remodeling complex that enables nucleosome repositioning and gene activation by stabilizing interactions between the BRG1 or BRM ATPase and transcription factors during development and metabolism. This protein, which is about 530 amino acids long, contains two SWI3-like ATPase-association domains that bind the ATPase motor non-covalently, flanked by intrinsically disordered regions that allow for modular assembly into canonical BAF, neural progenitor BAF (npBAF), or specialized lipoBAF complexes with ARID1A or ARID1B, SS18, and tissue-specific partners. SMARCD3's primary function is to integrate signals from nuclear receptors such as RAR, PPAR gamma, and LXR, as well as lineage transcription factors like FOXA1, recruiting SWI/SNF to enhancers and promoters to slide or evict nucleosomes, deposit active histone marks like H3K27 acetylation, and drive transcription of genes involved in skeletal and cardiac muscle differentiation, lipogenesis through SREBP1, ACC, and FASN, glucose homeostasis via DEPTOR-AKT signaling, and epithelial-mesenchymal transition. In the lipoBAF complex, SMARCD3 senses feeding and insulin signals to remodel chromatin at lipogenic gene loci, increasing triglyceride production and repressing catabolic pathways, while in heart and muscle tissue, it partners with GATA4 and MEF2C to regulate genes essential for sarcomere and cytoskeletal organization during congenital morphogenesis. Dysregulation of SMARCD3 contributes to medulloblastoma dissemination, especially in Group 3 tumors through Reelin and H3K27 trimethylation, pancreatic cancer therapy resistance, abdominal aortic aneurysms, and poor outcomes across various solid tumors.

使用情報

Application WB, IP Dilution
WB IP
1:1000 1:100
Reactivity Human, Mouse, Rat, Monkey
Source Rabbit Monoclonal Antibody MW 60 kDa
Storage Buffer PBS, pH 7.2+50% Glycerol+0.05% BSA+0.01% NaN3
Storage
(from the date of receipt)
-20°C (avoid freeze-thaw cycles), 2 years
WB
Experimental Protocol:
 
Sample preparation
1. Tissue: Lyse the tissue sample by adding an appropriate volume of ice-cold RIPA/Nuclear Lysis Buffer (containing Protease Inhibitor Cocktail),and homogenize the tissue at a low temperature.
2. Adherent cell: Aspirate the culture medium and wash the cells with ice-cold PBS twice. Lyse the cells by adding an appropriate volume of RIPA/Nuclear Lysis Buffer (containing Protease Inhibitor Cocktail) and put the sample on ice for 5 min.
3. Suspension cell: Transfer the culture medium to a pre-cooled centrifuge tube. Centrifuge and aspirate the supernatant. Wash the cells with ice-cold PBS twice. Lyse the cells by adding an appropriate volume of RIPA/Nuclear Lysis Buffer (containing Protease Inhibitor Cocktail) and put the sample on ice for 5 min.
4. Place the lysate into a pre-cooled microcentrifuge tube. Centrifuge at 4°C for 15 min. Collect the supernatant;
5. Remove a small volume of lysate to determine the protein concentration;
6. Combine the lysate with protein loading buffer. Boil 20 µL sample under 95-100°C for 5 min. Centrifuge for 5 min after cool down on ice.
 
Electrophoretic separation
1. According to the concentration of extracted protein, load appropriate amount of protein sample and marker onto SDS-PAGE gels for electrophoresis. Recommended separating gel (lower gel) concentration: 10%. Reference Table for Selecting SDS-PAGE Separation Gel Concentrations
2. Power up 80V for 30 minutes. Then the power supply is adjusted (110 V~150 V), the Marker is observed, and the electrophoresis can be stopped when the indicator band of the predyed protein Marker where the protein is located is properly separated. (Note that the current should not be too large when electrophoresis, too large current (more than 150 mA) will cause the temperature to rise, affecting the result of running glue. If high currents cannot be avoided, an ice bath can be used to cool the bath.)
 
Transfer membrane
1. Take out the converter, soak the clip and consumables in the pre-cooled converter;
2. Activate PVDF membrane with methanol for 1 min and rinse with transfer buffer;
3. Install it in the order of "black edge of clip - sponge - filter paper - filter paper - glue -PVDF membrane - filter paper - filter paper - sponge - white edge of clip";
4. The protein was electrotransferred to PVDF membrane. ( 0.45 µm PVDF membrane is recommended ) Reference Table for Selecting PVDF Membrane Pore Size Specifications
Recommended conditions for wet transfer: 200 mA, 120 min.
( Note that the transfer conditions can be adjusted according to the protein size. For high-molecular-weight proteins, a higher current and longer transfer time are recommended. However, ensure that the transfer tank remains at a low temperature to prevent gel melting.)
 
Block
1. After electrotransfer, wash the film with TBST at room temperature for 5 minutes;
2. Incubate the film in the blocking solution for 1 hour at room temperature;
3. Wash the film with TBST for 3 times, 5 minutes each time.
 
Antibody incubation
1. Use 5% skim milk powder to prepare the primary antibody working liquid (recommended dilution ratio for primary antibody 1:1000), gently shake and incubate with the film at 4°C overnight;
2. Wash the film with TBST 3 times, 5 minutes each time;
3. Add the secondary antibody to the blocking solution and incubate with the film gently at room temperature for 1 hour;
4. After incubation, wash the film with TBST 3 times for 5 minutes each time.
 
Antibody staining
1. Add the prepared ECL luminescent substrate (or select other color developing substrate according to the second antibody) and mix evenly;
2. Incubate with the film for 1 minute, remove excess substrate (keep the film moist), wrap with plastic film, and expose in the imaging system.

References

  • https://pubmed.ncbi.nlm.nih.gov/36653361/
  • https://pubmed.ncbi.nlm.nih.gov/17363140/

Application Data